Professor Stan Miklavcic

Director: Phenomics and Bioinformatics Research Centre School of Information Technology and Mathematical Sciences

Mawson Lakes Campus (OC1-40)
tel +61 8 830 23788
fax +61 8 830 25785

email Stan.Miklavcic@unisa.edu.au

Research Degree Supervisor

About me

For a complete list of all of my publications (journal articles, papers in conference proceedings and book chapters) please refer to my individual author link on Google Scholar. Please contact me if you are interested in obtaining an electronic copy of any of the papers listed below.

School of Information Technology and Mathematical Sciences

Offering degrees in IT, mathematics, science and data science, the School is a leading Australian applied maths department.

Tweets by @UniversitySA

Research

Research themes

Transforming industries
Scarce resources
Healthy futures

Research focus

Electrical and Electronic Engineering
Engineering
Mathematical Sciences
Information and Computing Sciences
Physical Sciences

Highlights

Mathematical Modelling (esp. of biological and physical chemical systems)
Plant Biophysics
Mathematical Methods in Physics, Chemistry and Biology
Theoretical Colloid and Surface Science (surface forces, electrokinetics, double layer theory, physics of macromolecules)
Fluid Dynamics and Hydrodynamic Stability
Inequalities and their applications (esp. to dynamic and static stability problems);

Research

Outputs

Research since 2008 is shown below. To see earlier years visit ResearcherID or Scopus

Open access indicates that an output is open access.

Chapters

Year	Output
2015	Kumar, P, Cai, J & Miklavcic, SJ 2015, 'A complete system for 3D reconstruction of roots for phenotypic analysis', in S, Changming et al. (eds), Signal and image analysis for biomedical and life sciences, Springer, Switzerland, ch. 14, pp. 249-270. 2 2 2
2009	Torokhti, A & Miklavcic, SJ 2009, 'Data compression and De-compression by Causal Filters with Variable Finite Memory', in Kankesu Jayanthakumaran, Advanced Technologies, In-Teh, Vulkovar, Croatia, pp. 631-654.

Journal Articles

Year	Output
2017	Chopin, J, Laga, H & Miklavcic, SJ 2017, 'A new method for accurate, high-throughput volume estimation from three 2D projective images', International journal of food properties, online, pp. 1-14.
2017	Foster, KJ & Miklavcic, SJ 2017, 'A comprehensive biophysical model of ion and water transport in plant roots. I. clarifying the roles of endodermal barriers in the salt stress response', Frontiers in plant science, vol. 8, article no. 1326, pp. 1-18. Open access
2017	Williamson, NH, Röding, M, Liu, H, Galvosas, P, Miklavcic, SJ & Nydén, M 2017, 'The pseudo 2-D relaxation model for obtaining T1-T2 relationships from 1-D T1 and T2 measurements of fluid in porous media', Microporous and mesoporous materials, online, pp. 1-4.
2017	Williamson, NH, Röding, M, Miklavcic, SJ & Nydén, M 2017, 'Scaling exponent and dispersity of polymers in solution by diffusion NMR', Journal of colloid and interface science, vol. 493, pp. 393-397.
2016	Cai, J, Okamoto, M, Atieno, J, Sutton, T & Miklavcic, SJ 2016, 'Quantifying the onset and progression of plant senescence by color image analysis for high throughput applications', PLOS ONE, vol. 11, no. 6, article no. e0157102, pp. 1-21. Open access 3
2016	Chopin, J, Laga, H & Miklavcic., SJ 2016, 'A hybrid approach for improving image segmentation: application to phenotyping of wheat leaves', Plos one, vol. 11, no. 12, pp. 1-18. Open access 1
2016	Diaby, AL, Miklavcic, SJ & Addai-Mensah, J 2016, 'Optimization of scheduled cleaning of fouled heat exchanger network under ageing using genetic algorithm', Chemical engineering research and design, vol. 113, pp. 223-240.
2016	Diaby, AL, Miklavcic, SJ, Bari, S & Addai-Mensah, J 2016, 'Evaluation of crude oil heat exchanger network fouling behavior under aging conditions for scheduled cleaning', Heat transfer engineering, vol. 37, no. 15, pp. 1211-1230. 1 1
2016	Foster, KJ & Miklavcic, SJ 2016, 'Modeling root zone effects on preferred pathways for the passive transport of ions and water in plant roots', Frontiers in Plant Science, vol. 7, article no. 914, pp. 1-14. Open access 7 7 1
2016	Kovalchuk, N, Laga, H, Cai, J, Kumar, P, Parent, B, Lu, Z, Miklavcic, SJ & Haefele, SM 2016, 'Phenotyping of plants in competitive but controlled environments: a study of drought response in transgenic wheat', CSIRO Publishing, vol. 44, pp. 290-301. Open access 1 1
2016	Torokhti, A, Miklavcic, S & Soto-Quiros, P 2016, 'Distributed Systems: Identification, Optimization and Simulations', International Journal of Electronics and Electrical Engineering, vol. 4, no. 4, pp. 322-327. Open access
2016	Williamson, NH, Roding, M, Glavosas, P, Miklavcic, SJ & Nyden, M 2016, 'Obtaining T1-T2 distribution functions from 1-dimensional T1 and T2 measurements: the pseudo 2-D relaxation model', Journal of magnetic resonance, vol. 269, pp. 186-195. 1 2
2015	Cai, J, Zeng, Z, Connor, JN, Huang, CY, Melino, V, Kumar, P & Miklavcic, SJ 2015, 'RootGraph: a graphic optimization tool for automated image analysis of plant roots', Journal of experimental botany, vol. 66, no. 21, pp. 6551-6562. Open access 11 10 19
2015	Chopin, J, Laga, H & Miklavcic, SJ 2015, 'The influence of object shape on the convergence of active contour models for image segmentation', Computer journal, vol. 59, no. 5, pp. 603-615. 1 1
2015	Chopin, J, Laga, H, Huang, CY, Heuer, S & Miklavcic, SJ 2015, 'RootAnalyzer: A cross-section image analysis tool for automated characterization of root cells and tissues', PLoS ONE, vol. 10, pp. 1-22. Open access 5 5 4
2015	Foster, KJ & Miklavcic, SJ 2015, 'Toward a biophysical understanding of the salt stress response of individual plant cells', Journal of theoretical biology, vol. 385, pp. 130-142. 3 3 1
2015	Islam, N, Bradshaw-Hajek, B, Miklavcic, S & White, L 2015, 'The onset of recirculation flow in periodic capillaries: geometric effects', European journal of mechanics B : fluids, vol. 53, pp. 119-128. Open access 1 1
2015	Kumar, P & Miklavcic, SJ 2015, 'Integrated self-calibration of single axis motion for three-dimensional reconstruction of roots', IET computer vision, vol. 9, no. 6, pp. 850-856.
2015	Lindén, JB, Larsson, M, Kaur, S, Skinner, W, Miklavcic, S, Nann, T, Kempson, I & Nydén, M 2015, 'Polyethyleneimine for copper absorption II: kinetics, selectivity and efficiency from seawater', RSC Advances, vol. 5, no. 64, pp. 51883-51890. Open access 6 5
2014	Foster, KJ & Miklavcic, SJ 2014, 'On the competitive uptake and transport of ions through differentiated root tissues', Journal of Theoretical Biology, vol. 340, pp. 1-10. 5 4
2014	Grant, A, Torokhti, A & Miklavcic, S 2014, 'Efficient compression of distributed information in estimation fusion', Electronic notes in discrete mathematics, vol. 46, pp. 297-304. 1
2014	Kumar, P, Huang, C, Cai, J & Miklavcic, SJ 2014, 'Root phenotyping by root tip detection and classification through statistical learning', Plant and soil: international journal on plant-soil relationships, vol. 380, no. 1, pp. 193-209. 13 13 6
2014	Laga, H, Kurtek, S, Srivastava, A & Miklavcic, SJ 2014, 'Landmark-free statistical analysis of the shape of plant leaves', Journal of Theoretical Biology, vol. 363, pp. 41-52. 21 17
2014	Miklavcic, SJ, Nydén, M, Lindén, J & Schulz, J 2014, 'Mathematically modelling competitive ion absorption in a polymer matrix', RSC Advances, vol. 4, pp. 60349-60632. 2 2
2013	Aarao, J, Miklavcic, SJ & Ward, DA 2013, 'Extended-domain-eigenfunction method (EDEM): A study of ill posedness and regularization', Journal of physics A: mathematical and theoretical, vol. 46, no. 8, article no. 085207, pp. 1-22. 1 1
2013	Cai, J & Miklavcic, SJ 2013, 'Surface fitting for individual image thresholding and beyond', IET Image Processing, vol. 7, no. 6, pp. 596-605. 7 7
2013	Foster, KJ & Miklavcic, SJ 2013, 'Mathematical modelling of the uptake and transport of salt in plant roots', Journal of Theoretical Biology, vol. 336, pp. 132-143. 6 5
2013	Hajek, BH, Miklavcic, SJ & Ward, DA 2013, 'A composite Level Set and Extended-Domain-Eigenfunction Method for simulating 2D Stokes flow involving a free surface', Journal of Computational and Applied Mathematics, vol. 237, pp. 389-402. 1 1
2012	Cai, J & Miklavcic, S 2012, 'Automated extraction of three-dimensional cereal plant structures from two-dimensional orthographic images', IET image processing, vol. 6, no. 6, pp. 687-696. 10 9
2012	Torokhti, A & Miklavcic, SJ 2012, 'Piecewise interpolation filter for effective processing of large signal sets', World Academy of Science, Engineering and Techn..., vol. 67, pp. 27-34.
2011	Aarão, J, Bradshaw-Hajek, B, Miklavcic, S & Ward, D 2011, 'Numerical implementation of the EDEM for modified Helmholtz BVPs on annular domains', Journal of computational and applied mathematics, vol. 235, no. 5, pp. 1342-1353. 3 2
2011	Cai, J, Golzarian, MR & Miklavcic, SJ 2011, 'Novel image segmentation based on machine learning and its application to plant analysis', International journal of information and electronics engineering, vol. 1, no. 1, pp. 79-84.
2011	Torokhti, A & Miklavcic, S 2011, 'Filtering of infinite sets of stochastic signals: an approach based on interpolation techniques', Signal processing, vol. 91, no. 11, pp. 2556-2566. 4 4
2010	Aarao, J, Hajek, BH, Miklavcic, SJ & Ward, DA 2010, 'The extended-domain-eigenfunction method for solving elliptic boundary value problems with annular domains', Journal of Physics A: Mathematical and Theoretical.
2010	Hajek, BH, Miklavcic, SJ & White, LR 2010, 'High-frequency behavior of the dynamic mobility and dielectric response of concentrated colloidal dispersions', Langmuir, vol. 26, no. 3, pp. 1656-1665. 4 4
2010	Hajek, BH, Miklavcic, SJ & White, LR 2010, 'The actual dielectric response function for a colloidal suspension of spherical particles', Langmuir, vol. 26, no. 11, pp. 7875-7884. 4 4
2010	Torokhti, A & Miklavcic, SJ 2010, 'Data compression under constraints of causality and variable finite memory', Signal Processing, vol. 90, no. 10, pp. 2822-2834. 2 1
2009	Hajek, BH, Miklavcic, SJ & White, LR 2009, 'Dynamic dielectric response of concentrated colloidal dispersions: comparison between theory and experiment', Langmuir, vol. 25, no. 4, pp. 1961-1969. 14 14
2008	Hajek, BH, Miklavcic, SJ & White, L 2008, 'Frequency-dependant electrical conductivity of concentrated dispersions of spherical colloidal particles', Langmuir, vol. 24, no. 9, pp. 4512-4522. 13 15

Conferences

Year	Output
2016	Fung, C, Sedev, R, Miklavcic, S & Connor, J 2016, 'Influence of electric field on the structure of a nano-confined concentrated electrolyte', Chemeca 2016: Chemical engineering: regeneration, recovery and reinvention, Chemeca, article no. 3407109, pp. 1-8.
2016	Schulz, J, Connor, J, Sedev, R, Wedding, B & Miklavcic, S 2016, 'Measuring particle-bubble interactions using optical tweezers', Chemeca 2016: Chemical engineering: regeneration, recovery and reinvention, Chemeca, article no. 3407088, pp. 1-8.
2015	Cai, J, Nguyen, VL, Wheal, M, Stangoulis, J & Miklavcic, SJ 2015, 'High throughput root phenotyping for cereal plants using spatial distribution in polar coordinate system', in T Weber, M McPhee & RS Anderssen (eds), 21st International Congress on Modelling and Simulation (MOSDIM2015), Modelling and Simulation Society of Australia and New Zealand, pp. 1-6. Open access
2015	Laga, H, Kumar, P, Cai, J, Haefele, S, Anbalagan, R, Kovalchuk, N & Miklavcic, SJ 2015, 'Gaussian mixture models for image-based cereal plant canopy analysis', in T Weber, M McPhee & RS Anderssen (eds), 21st International Congress on Modelling and Simulation (MODSIM2015), Modelling and Simulation Society of Australia and New Zealand, pp. 1-7. Open access
2014	Kumar, P, Matheyarasu, R, Bolan, N & Miklavcic, S 2014, 'Phenotyping earthworm by image analysis', 2014 13th International Conference on Control, Automation, Robotics and Vision, IEEE, pp. 205-210.
2014	Lacina, DA, Miklavcic, SJ & Addai-Mensah, J 2014, 'Optimal cleaning schedule of fouled heat exchanger network under ageing effect using genetic algorithm: modelling framework', Chemeca, Chemeca, article no. 1277, pp. 1-21.
2014	Lacina, DA, Miklavcic, SJ & Addai-Mensah, J 2014, 'Planning and optimisation of scheduled cleaning of fouled heat exchanger network under ageing using genetic algorithm', Chemeca, Chemeca, article no. 1279, pp. 1-16.
2014	Qiongyan, L, Cai, J, Berger, B & Miklavcic, S 2014, 'Study on spike detection on cereal plants', 13th International Conference on Control, Automation, Robotics and Computer Vision, IEEE Press, pp. 228-233.
2013	Cai, J & Miklavcic, S 2013, 'Automatic curve selection for lens distortion correction using Hough transform energy', 2013 IEEE Workshop on Applications of Computer Vision, WACV 2013, IEEE, pp. 455-460. 5 2
2013	Kumar, P, Cai, J & Miklavcic, SJ 2013, 'Improved ellipse fitting by considering the eccentricity of data point sets', in (eds), 2011 IEEE International Conference on Image Processing (ICIP), IEEE Press, pp. 815-819. 5 2
2013	Lacina Diaby, A, Bari, S, Miklavcic, SJ & Addai-Mensah, J 2013, 'On a precursor model to a genetic algorithm model for the scheduling of heat exchanger network cleaning', Chemeca 2013, Engineers Australia, pp. 506-514. Open access
2013	Laga, H & Miklavcic, SJ 2013, 'Curve-based stereo matching for 3D modeling of plants', in J Piantadosi, RS Anderssen & J Boland (eds), 20th International Congress on Modelling and Simulation, Modelling and Simulation Society of Australia and New Zealand, pp. 524-530.
2013	Laga, H, Kurtek, S, Srivastava, A & Miklavcic, SJ 2013, 'Statistical shape models of plant leaves', 2013 IEEE International Conference on Image Processing, IEEE Press, pp. 3503-3507. 2 1
2012	Kumar, P, Cai, J & Miklavcic, S 2012, 'High-throughput 3D modelling of plants for phenotypic analysis', in B McCane, S Mills & J Deng (eds), 27th International Conference of Image and Vision Computing New Zealand (IVCNZ'12), Association for Computing Machinery, pp. 301-306. 10
2012	Kumar, P, Cai, J & Miklavcic, S 2012, 'Root crown detection using statistics of Zernike moments', 2012 12th International Conference on Control, Automation, Robotics & Vision (ICARCV), IEEE Press, pp. 1130-1135. 4 2
2012	Kumar, P, Cai, J & Miklavcic, SJ 2012, 'Automated detection of root crowns using Gaussian mixture model and Bayes classification', in IEEE, DICTA 2012, IEEE Press, pp. 1-7. 6
2012	Laga, H, Kurtek, S, Srivastava, A, Golzarian, M & Miklavcic, SJ 2012, 'A Riemannian Elastic Metric for Shape-based Plant Leaf Classification', in IEEE, DICTA 2012: International Conference on Digital Image Computing: Techniques and Applications, IEEE, pp. 1-7. 19
2012	Torokhti, A & Miklavcic, SJ 2012, 'Optimal multidimensional signal processing in wireless sensor networks', in Enrique Cabello, Maria Virvou, Mohammad Obaidat, Rafel Caldeirinraha, Hong Ji, Dimitrios Vergados, International Conference on Signal Processing and Multimedia Applications, SIGMAP 2012 and International Conference on Wireless Information Networks and Systems, WINSYS 2012, pp. 126-129.
2012	Torokhti, A & Miklavcic, SJ 2012, 'Robust estimation of large data sets by piecewise-linear interpolating estimator', in Arno¿t Komárek, Stanislav Nagy, 27th International Workshop on Statistical Modelling (IWSM'27), Statistical Modelling Society, pp. 765-770.
2011	Cai, J & Miklavcic, S 2011, 'The generation of digital terrain models from LiDAR data using seeding and filtering and its application to flood modelling', 2nd International Conference on Multimedia Technology, ICMT 2011, IEEE, pp. 5622-5625. 1
2011	Cai, J, Golzarian, M & Miklavcic, S 2011, 'Novel image segmentation using gaussian mixture models: application to plant phenotypic analysis', 2011 3rd International Conference on Signal Acquisition and Processing (ICSAP 2011), IEEE, pp. 308-312.
2011	Golzarian, M, Cai, J, Frick, RA & Miklavcic, S 2011, 'A comparative evaluation of level set algorithms with applications for the segmentation of narrow-leaf plant images', 2011 3rd International Conference on Signal Acquisition and Processing (ICSAP 2011), IEEE, vol. 1, pp. 282-286.
2009	Torokhti, A & Miklavcic, SJ 2009, 'Filtering and compression of stochastic signals under constraint of variable finite memory', in Joaquim Filipe, Juan Andrade Cetto & Jean-Louis Ferrier, INSTICC, vol. 3, pp. 104-109.
2008	Torokhti, A & Miklavcic, SJ 2008, 'Compression and filtering of Random Signals under Constraint of Variable Memory', in C Ardil, WASET, vol. 47, pp. 151-156.

External engagement & recognition

Collaborations

External engagement & recognition

Collaborations

Organisation	Country
Activinsights	UNITED KINGDOM
Australian Centre for Plant Functional Genomics	AUSTRALIA
Australian Grain Technologies Pty Ltd	AUSTRALIA
Chalmers University of Technology	SWEDEN
Dow AgroSciences	AUSTRALIA
Flinders University	AUSTRALIA
Florida State University	UNITED STATES
Fraunhofer Institute for Industrial Organisation	GERMANY
Grains Research and Development Corporation	AUSTRALIA
INRA Institut National de La Recherche Agronomique	FRANCE
International Center for Tropical Agriculture	THAILAND
Leibniz Institute of Freshwater Ecology and Inland Fisheries	GERMANY
Murdoch University	AUSTRALIA
Ohio State University	UNITED STATES
Research Labs of Australia Pty Ltd	AUSTRALIA
Shandong University	CHINA
University College London	UNITED KINGDOM
University of Adelaide	AUSTRALIA
University of South Australia	AUSTRALIA
Victoria University of Wellington	NEW ZEALAND

External engagement & recognition

Engagement/recognition	Year
Best Paper Digital Image Computing, Techniques and Applications Conference	2012

Other

Fellow, Australian Mathematical Society (FAustMS)
Member (Lifetime), Swedish Mathematical Society (MSMS)
Member, The Royal Australian Chemical Institute (MRACI)
Foundation Member, Australasian Colloid and Interface Society (MACIS)
Member, Australian Society of Plant Scientists (MASPS)

Teaching & student supervision

Highlights

Analysis
Partial Differential Equations
Mathematical Methods
Mathematical Modeling

Teaching & student supervision

Research degree supervision

Supervisions from 2010 shown

Thesis title	Student status
Mathematical modelling of water and solute transport in plants	Current
The effect of applied potential on surface forces between electrified interfaces	Current
Unraveling material heterogeneity: Combining nuclear magnetic resonance with statistical modeling	Current
Development of a robust and optimised fouling mitigation model for oil industries	Completed
E.D.E.M. extended-domain-eigenfunction method	Completed
Fluid flow and particle transport through periodic capillaries	Completed
Identification of cognitive activity in EEG during cognitive tasks including web search	Completed
New methods and algorithms for image-based plant phenotyping	Completed
Precise co-location of haptic devices in visuo-haptic augmented reality	Completed
The biophysics of the salt stress response of plant roots	Completed

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Professor Stan Miklavcic

About me

About me

School of Information Technology and Mathematical Sciences

About me

Professional Associations

Experience

Qualifications

Research

Research themes

Research focus

Highlights

Projects

Outputs

Chapters

Journal Articles

Conferences

Current research & highlights

External engagement & recognition

Collaborations

Collaborations

External engagement & recognition

Best Paper

Other

Teaching & student supervision

Highlights

Courses and programs

Courses I teach and/or co-ordinate

Research degree supervision

Gallery