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Dr Josh Chopin

Lecturer: Mathematical Sciences UniSA STEM

email Joshua.Chopin@unisa.edu.au

Research Degree Supervisor

Research

Research focus

Agricultural Biotechnology
Biochemistry and Cell Biology
Classical Physics
Food Sciences
Geomatic Engineering

Research

Outputs

Research outputs for the last seven years are shown below. To see earlier years visit ORCID or Scopus

Open access indicates that an output is open access.

Journal Articles

Year	Output
2018	Cai, J, Kumar, P, Chopin, J & Miklavcic, SJ 2018, 'Land-based crop phenotyping by image analysis: accurate estimation of canopy height distributions using stereo images', PLoS One, vol. 13, no. 5, pp. 1-21. Open access 17 16 2
2018	Chopin, J, Kumar, P & Miklavcic, SJ 2018, 'Land-based crop phenotyping by image analysis: consistent canopy characterization from inconsistent field illumination', Plant Methods, vol. 14, no. 1, article no. 39, pp. 1-15. Open access 8 9 2
2018	Hasan, MM, Chopin, JP, Laga, H & Miklavcic, SJ 2018, 'Detection and analysis of wheat spikes using Convolutional Neural Networks', Plant Methods, vol. 14, article no. 100, pp. 1-13. Open access 101 83 1
2018	Khan, Z, Chopin, J, Cai, J, Eichi, V-R, Haefele, S & Miklavcic, SJ 2018, 'Quantitative estimation of wheat phenotyping traits using ground and aerial imagery', Remote Sensing, vol. 10, no. 6, pp. 1-19. Open access 26 25
2017	Chopin, J, Laga, H & Miklavcic, SJ 2017, 'A new method for accurate, high-throughput volume estimation from three 2D projective images', International Journal of Food Properties, vol. 20, no. 10, pp. 2344-2357. Open access 11 10
2016	Chopin, J, Laga, H & Miklavcic, SJ 2016, 'The influence of object shape on the convergence of active contour models for image segmentation', Computer Journal, vol. 59, no. 5, pp. 603-615. 6 5
2016	Chopin, J, Laga, H & Miklavcic., SJ 2016, 'A hybrid approach for improving image segmentation: application to phenotyping of wheat leaves', PLoS One, vol. 11, no. 12, pp. 1-18. Open access 13 11
2015	Chopin, J, Laga, H, Huang, CY, Heuer, S & Miklavcic, SJ 2015, 'RootAnalyzer: A cross-section image analysis tool for automated characterization of root cells and tissues', PLoS One, vol. 10, pp. 1-22. Open access 25 21 3

Conferences

Year	Output
2013	Chopin, JP, Miklavcic, SJ & Laga, H 2013, 'Selection of parameters in active contours for the phenotypic analysis of plants', in J Piantadosi, RS Anderssen & J Boland (eds), 20th International Congress on Modelling and Simulation, Modelling and Simulation Society of Australia and New Zealand, pp. 510-516. Open access 3

External engagement & recognition

Collaborations

External engagement & recognition

Collaborations

Organisation	Country
Australian Centre for Plant Functional Genomics	AUSTRALIA
Murdoch University	AUSTRALIA
University of Adelaide	AUSTRALIA
University of South Australia	AUSTRALIA

Teaching & student supervision

Teaching & student supervision

Research degree supervision

Supervisions from 2010 shown

Thesis title	Student status
Developing high throughput spectroscopic methods for screening plant genotypes	Current

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